Publications
17 results
17 results
2024
Pan, W.; Zhang, W.; Zheng, B.; Camellato, B.; Stern, J.; Lin, Z.; Khodadadi-Jamayran, A.; Kim, J.; Sommer, P.; Khalil, K.; Weldon, E.; Bai, J.; Zhu, Y.; Meyn, P.; Heguy, A.; Mangiola, M.; Griesemer, A.; Keating, B.; Montgomery, R.; Xia, B.; Boeke, J.
Cellular Dynamics in Pig-to-Human Kidney Xenotransplantation. Med 2024. https://doi.org/10.1016/j.medj.2024.05.003.
Pan, W.; Zhang, W.; Zheng, B.; Camellato, B.; Stern, J.; Lin, Z.; Khodadadi-Jamayran, A.; Kim, J.; Sommer, P.; Khalil, K.; Weldon, E.; Bai, J.; Zhu, Y.; Meyn, P.; Heguy, A.; Mangiola, M.; Griesemer, A.; Keating, B.; Montgomery, R.; Xia, B.; Boeke, J.
Cellular Dynamics in Pig-to-Human Kidney Xenotransplantation. Med 2024. https://doi.org/10.1016/j.medj.2024.05.003.
Schmauch, E.; Piening, B.; Mohebnasab, M.; Xia, B.; Zhu, C.; Stern, J.; Zhang, W.; Dowdell, A.; Kim, J.; Andrijevic, D.; Khalil, K.; Jaffe, I.; Loza, B.-L.; Gragert, L.; Camellato, B.; Oliveira, M.; O’Brien, D.; Chen, H.; Weldon, E.; Gao, H.; Gandla, D.; Chang, A.; Bhatt, R.; Gao, S.; Lin, X.; Reddy, K.; Kagermazova, L.; Habara, A.; Widawsky, S.; Liang, F.-X.; Sall, J.; Loupy, A.; Heguy, A.; Taylor, S.; Zhu, Y.; Michael, B.; Jiang, L.; Jian, R.; Chong, A.; Fairchild, R.; Linna-Kuosmanen, S.; Kaikkonen, M.; Tatapudi, V.; Lorber, M.; Ayares, D.; Mangiola, M.; Narula, N.; Moazami, N.; Pass, H.; Herati, R.; Griesemer, A.; Kellis, M.; Snyder, M.; Montgomery, R.; Boeke, J.; Keating, B.
Integrative Multi-Omics Profiling in Human Decedents Receiving Pig Heart Xenografts. Nat Med 2024, 30 (5), 1448-1460. https://doi.org/10.1038/s41591-024-02972-1.
Schmauch, E.; Piening, B.; Mohebnasab, M.; Xia, B.; Zhu, C.; Stern, J.; Zhang, W.; Dowdell, A.; Kim, J.; Andrijevic, D.; Khalil, K.; Jaffe, I.; Loza, B.-L.; Gragert, L.; Camellato, B.; Oliveira, M.; O’Brien, D.; Chen, H.; Weldon, E.; Gao, H.; Gandla, D.; Chang, A.; Bhatt, R.; Gao, S.; Lin, X.; Reddy, K.; Kagermazova, L.; Habara, A.; Widawsky, S.; Liang, F.-X.; Sall, J.; Loupy, A.; Heguy, A.; Taylor, S.; Zhu, Y.; Michael, B.; Jiang, L.; Jian, R.; Chong, A.; Fairchild, R.; Linna-Kuosmanen, S.; Kaikkonen, M.; Tatapudi, V.; Lorber, M.; Ayares, D.; Mangiola, M.; Narula, N.; Moazami, N.; Pass, H.; Herati, R.; Griesemer, A.; Kellis, M.; Snyder, M.; Montgomery, R.; Boeke, J.; Keating, B.
Integrative Multi-Omics Profiling in Human Decedents Receiving Pig Heart Xenografts. Nat Med 2024, 30 (5), 1448-1460. https://doi.org/10.1038/s41591-024-02972-1.
Xia, B.; Zhang, W.; Zhao, G.; Zhang, X.; Bai, J.; Brosh, R.; Wudzinska, A.; Huang, E.; Ashe, H.; Ellis, G.; Pour, M.; Zhao, Y.; Coelho, C.; Zhu, Y.; Miller, A.; Dasen, J.; Maurano, M.; Kim, S.; Boeke, J.; Yanai, I.
On the Genetic Basis of Tail-Loss Evolution in Humans and Apes. Nature 2024, 626 (8001), 1042-1048. https://doi.org/10.1038/s41586-024-07095-8.
Xia, B.; Zhang, W.; Zhao, G.; Zhang, X.; Bai, J.; Brosh, R.; Wudzinska, A.; Huang, E.; Ashe, H.; Ellis, G.; Pour, M.; Zhao, Y.; Coelho, C.; Zhu, Y.; Miller, A.; Dasen, J.; Maurano, M.; Kim, S.; Boeke, J.; Yanai, I.
On the Genetic Basis of Tail-Loss Evolution in Humans and Apes. Nature 2024, 626 (8001), 1042-1048. https://doi.org/10.1038/s41586-024-07095-8.
2023
Tan, J.; Shenker-Tauris, N.; Rodriguez-Hernaez, J.; Wang, E.; Sakellaropoulos, T.; Boccalatte, F.; Thandapani, P.; Skok, J.; Aifantis, I.; Fenyö, D.; Xia, B.; Tsirigos, A.
Cell-Type-Specific Prediction of 3D Chromatin Organization Enables High-Throughput in Silico Genetic Screening. Nat Biotechnol 2023, 41 (8), 1140-1150. https://doi.org/10.1038/s41587-022-01612-8.
Tan, J.; Shenker-Tauris, N.; Rodriguez-Hernaez, J.; Wang, E.; Sakellaropoulos, T.; Boccalatte, F.; Thandapani, P.; Skok, J.; Aifantis, I.; Fenyö, D.; Xia, B.; Tsirigos, A.
Cell-Type-Specific Prediction of 3D Chromatin Organization Enables High-Throughput in Silico Genetic Screening. Nat Biotechnol 2023, 41 (8), 1140-1150. https://doi.org/10.1038/s41587-022-01612-8.
2022
Barkley, D.; Moncada, R.; Pour, M.; Liberman, D.; Dryg, I.; Werba, G.; Wang, W.; Baron, M.; Rao, A.; Xia, B.; França, G.; Weil, A.; Delair, D.; Hajdu, C.; Lund, A.; Osman, I.; Yanai, I.
Cancer Cell States Recur across Tumor Types and Form Specific Interactions With the Tumor Microenvironment. Nat Genet 2022, 54 (8), 1192-1201. https://doi.org/10.1038/s41588-022-01141-9.
Barkley, D.; Moncada, R.; Pour, M.; Liberman, D.; Dryg, I.; Werba, G.; Wang, W.; Baron, M.; Rao, A.; Xia, B.; França, G.; Weil, A.; Delair, D.; Hajdu, C.; Lund, A.; Osman, I.; Yanai, I.
Cancer Cell States Recur across Tumor Types and Form Specific Interactions With the Tumor Microenvironment. Nat Genet 2022, 54 (8), 1192-1201. https://doi.org/10.1038/s41588-022-01141-9.
Xia, B.; Yanai, I.
Gene Expression Levels Modulate Germline Mutation Rates through the Compound Effects of Transcription-Coupled Repair and Damage. Hum Genet 2022, 141 (6), 1211-1222. https://doi.org/10.1007/s00439-021-02355-3.
Xia, B.; Yanai, I.
Gene Expression Levels Modulate Germline Mutation Rates through the Compound Effects of Transcription-Coupled Repair and Damage. Hum Genet 2022, 141 (6), 1211-1222. https://doi.org/10.1007/s00439-021-02355-3.
2020
Xia, B.; YunYan; Baron, M.; Wagner, F.; Barkley, D.; Chiodin, M.; Kim, S. Y.; Keefe, D. L.; Alukal, J. P.; Boeke, J. D.; Yanai, I.
Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates. Cell 2020, 180 (2), 248-262.
Xia, B.; YunYan; Baron, M.; Wagner, F.; Barkley, D.; Chiodin, M.; Kim, S. Y.; Keefe, D. L.; Alukal, J. P.; Boeke, J. D.; Yanai, I.
Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates. Cell 2020, 180 (2), 248-262.
Yi, C.; Zhu, C.; Xia, B.
Yi, C.; Zhu, C.; Xia, B.
2019
Xia, B.; Yanai, I.
A Periodic Table of Cell Types. Development 2019, 146 (12). https://doi.org/10.1242/dev.169854.
Xia, B.; Yanai, I.
A Periodic Table of Cell Types. Development 2019, 146 (12). https://doi.org/10.1242/dev.169854.
Zeng, H.; Mondal, M.; Song, R.; Zhang, J.; Xia, B.; Liu, M.; Zhu, C.; He, B.; Gao, Y. Q.; Yi, C.
Unnatural Cytosine Bases Recognized As Thymines by DNA Polymerases by the Formation of the Watson-Crick Geometry. Angew Chem Int Ed Engl 2019, 58 (1), 130-133. https://doi.org/10.1002/anie.201807845.
Zeng, H.; Mondal, M.; Song, R.; Zhang, J.; Xia, B.; Liu, M.; Zhu, C.; He, B.; Gao, Y. Q.; Yi, C.
Unnatural Cytosine Bases Recognized As Thymines by DNA Polymerases by the Formation of the Watson-Crick Geometry. Angew Chem Int Ed Engl 2019, 58 (1), 130-133. https://doi.org/10.1002/anie.201807845.
2018
Zeng, H.; He, B.; Xia, B.; Bai, D.; Lu, X.; Cai, J.; Chen, L.; Zhou, A.; Zhu, C.; Meng, H.; Gao, Y.; Guo, H.; He, C.; Dai, Q.; Yi, C.
Bisulfite-Free, Nanoscale Analysis of 5-Hydroxymethylcytosine at Single Base Resolution. J Am Chem Soc 2018, 140 (41), 13190-13194. https://doi.org/10.1021/jacs.8b08297.
Zeng, H.; He, B.; Xia, B.; Bai, D.; Lu, X.; Cai, J.; Chen, L.; Zhou, A.; Zhu, C.; Meng, H.; Gao, Y.; Guo, H.; He, C.; Dai, Q.; Yi, C.
Bisulfite-Free, Nanoscale Analysis of 5-Hydroxymethylcytosine at Single Base Resolution. J Am Chem Soc 2018, 140 (41), 13190-13194. https://doi.org/10.1021/jacs.8b08297.
2017
Cimmino, L.; Dolgalev, I.; Wang, Y.; Yoshimi, A.; Martin, G.; Wang, J.; Ng, V.; Xia, B.; Witkowski, M.; Mitchell-Flack, M.; Grillo, I.; Bakogianni, S.; Ndiaye-Lobry, D.; Martín, M. T.; Guillamot, M.; Banh, R.; Xu, M.; Figueroa, M.; Dickins, R.; Abdel-Wahab, O.; Park, C.; Tsirigos, A.; Neel, B.; Aifantis, I.
Restoration of TET2 Function Blocks Aberrant Self-Renewal and Leukemia Progression. Cell 2017, 170 (6), 1079-1095.e20. https://doi.org/10.1016/j.cell.2017.07.032.
Cimmino, L.; Dolgalev, I.; Wang, Y.; Yoshimi, A.; Martin, G.; Wang, J.; Ng, V.; Xia, B.; Witkowski, M.; Mitchell-Flack, M.; Grillo, I.; Bakogianni, S.; Ndiaye-Lobry, D.; Martín, M. T.; Guillamot, M.; Banh, R.; Xu, M.; Figueroa, M.; Dickins, R.; Abdel-Wahab, O.; Park, C.; Tsirigos, A.; Neel, B.; Aifantis, I.
Restoration of TET2 Function Blocks Aberrant Self-Renewal and Leukemia Progression. Cell 2017, 170 (6), 1079-1095.e20. https://doi.org/10.1016/j.cell.2017.07.032.